CDS

Accession Number TCMCG051C43475
gbkey CDS
Protein Id XP_024443288.1
Location join(4398560..4398749,4398935..4399152,4399250..4399390,4399524..4399694,4401026..4401125,4401272..4401390,4401490..4401612,4401769..4401840,4402246..4402338,4402865..4402978,4403104..4403226,4403513..4403698,4403829..4403903,4404169..4404305,4405421..4405555,4406014..4406159,4406243..4406308,4406843..4406949,4407108..4407188,4407551..4407625,4407709..4407810,4407970..4408138,4408243..4408391,4408596..4408679,4408759..4408859,4409149..4409302,4409444..4409518,4409659..4409806,4410988..4411636,4412434..4412494,4412648..4412793,4412893..4413076,4413310..4413405,4413714..4414090,4414208..4414384,4414597..4414693,4414775..4414930,4415030..4415260,4415568..4415651,4415756..4415863)
Gene LOC7488047
GeneID 7488047
Organism Populus trichocarpa

Protein

Length 1939aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA17973
db_source XM_024587520.1
Definition rRNA biogenesis protein RRP5 [Populus trichocarpa]

EGGNOG-MAPPER Annotation

COG_category A
Description Protein RRP5 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14792        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000460        [VIEW IN EMBL-EBI]
GO:0000462        [VIEW IN EMBL-EBI]
GO:0000466        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008134        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009553        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030490        [VIEW IN EMBL-EBI]
GO:0030684        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032040        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042274        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048229        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGACAGCTCCTTCGAAGAAAAAACAACAGAATCCAAAACAAAACGACGGTCCAAAATTCAACAAAGCATCACAGAAGCAGTTCAAAGCGAAGCAGACGAAAAATAAGAAGAGTTTTTCAAACGACGCCGTCGTAAAAGATGCGTCTATTGCTTTGCAACTTGAAGATGACGTCCCTGACTTCCCTCGAGGTGGTAAGAGTTCGTTGAGTCAGAGAGAAAGAGAGGAAATTAGAGCACAAGTTGATGAAGAATTCGAGGGGGAGGAGAGGCGTTTGAATAAGAAGAATAAGAAGGGGAAGAAGTTTCAAAACAAGAGTAGTCAATTATCTGGAGATGATTTAGGTTCCCTTTTTGGCGATGTTTTAACCGGAAAACTGCCTCGTTTTGCTAATAAGATCACAATGAAGAACATTTCTCCTGGAATGAAGCTTTGGGGAGTTGTTACTGAAGTAAACGAGAAGGACCTTGTAATTAGTCTTCCTGGAGGATTGCGTGGATTAGTACGTTCTGTGGATGCAGTTGATCCTGTTTTGACTGATCAAATCGAGGATGGTGAAGGTAGCCTTCCAAGAGTATTCCATGTAGGGCAGCTGGTTTCATGCATTGTGTTGAAGTTGGATGATGATAAGAACGATAACAAGAAAAGAAAGATTTGGCTTTCTCTGCGCCTTTCGTTATTGCACAATGGCTTCTCATTAGATGCTGTTAAGGAAGGGATGGTCCTCACCGCATATGTCAAAAGCATTGAAGATCATGGTTTCATCCTGCATTTTGGTTTGTCATCGTTTATGGGATTTTTGCCAAAGAACAGCCAAGCTGAGAGCAGGGATTCTGAAGTGAAAACTGGGCAATTTTTACAGGGGATTGTTACAAAGATTGATAAAACTCGGAAAGTTGTTTATCTGAGCTCTGACCCAGATACAGTGTCTAAATGTGTGACTAAGGATCTTAAGGGCATTTCAATTGATCTTCTCATTCCAGGCATGATGGTTGATGCCCGTGTACAGTCGACCCTTGAAAATGGGATAATGTTATCATTCCTTACATACTTTACTGGAACTGTTGATATGTTTCATTTACAAAATACTTTCCCTACTTCAAATTGGAAGGACGATTATGCCAAGAATAAAAAGGTCAGTGCTCGTATATTATTTATCGATCCCTCAACTAGAGCTGTTGGTTTGACTCTCAATCAACATCTTGTTCACAACAATTCACCGCCATCTAGTGTTAAAGTTGGAGATATTTATGACATTGCAAAAGTAGTCAGGGTAGATAAAGGCATGGGACTTCTACTTGAAATCCCATCTACTCCGCTGCCAACTCCAGCATTTGTTAATGTATCTGATGTGGCTGAAGATGAGGTACGGAAGCTTGAAAAGAAGTTTAAGGAAGGAAGTAATGTTCGTGTTCGAATCCTTGGGTATAGGCATTTGGAAGGGCTTGCCACGGGGATTTTGAAGGCTAGTGCTTTTGAAGGATCTGTATTCACCCACTCTGATGTCAAGCCAGGCATGGCAACAAGGGCTAAAATCATAGCTGTTGACAGCTTTGGGGCTATTGTGCAATTTCCTGGTGGAGTGAAGGCACTTTGTCCGCTTCGACATATGTCTGAATTTGAAATTGTGAAACCTCGGAAAAAATTCAAGGTTGGAGCTGAGCTGTTTTTCCGTGTGCTGGGTTGCAAGTCCAAGAGAATAACTGTGACACACAAGAAAACTCTTGTTAAATCTAAACTTCCAATTCTTAGTTCATATTCTGATGCAACTGATGGACTAATTACACATGGTTGGATAACAAAGATTGAAAAGCCTGGATGCTTTGTCCATTTTTACAATGGAGTCCAGGGATTTGCCCCCAGATCTGAGCTTGGATTGGAACCAGGAAGTGATGCAATTTCAACTTATCAAGTTGGGCAGGTTGTCAAATGCAGAGTAATAAGTTCTATTGCTGCTTCACGCAGGATCAATCTTAGTTTCATAATGAAGCCTCTAAGGTTTTCTGAAGAAGATGGCATCAAGATGGGTAGTGTGGTTACTGGAGTTATTGATAAAGTTACCGCCTCTTCAGTAATAGTTTATGTTAATGCAAAAGACTACTTGAAGGGGACAATTGCTACCGAGCATTTGTCAGATCACCATGAACATGCTGCCTTGATGAAGTCAGTCTTGAAGCCTGGATATGAGTTTGATCAACTACTGGTCCTAGATATTGAGAGCAACAATTTGGCTCTCTCTGCAAAATATTCTCTTATCAAGTCTGCTTCTCAGCTTCCTTCGGATCTAAGCCAGATTCGTCCTCAGTCAATAGTCCATGGGTACATCTGTAACATGATTGAAACTGGCTGCTTTGTTCGCTTTCTTGGGAATTTGACGGCTTTCTCCCCTAGAAGCAAGGCAATGGATGACCAAAGATCTCAGCTTTCAGAAGCCTTTTACATTGGACAATCTGTTCGTAGTAATATACTCGATGTTAACAATGAAACAAGCAGAATAACAGTGTCTTTGAAGCAGTCATGCTGCTCATCTACAGATGCATGCTTTCTTCAAGAATACTTTCTCTCAGAGAACAAGATTGCTGATCTGCAATCTTCAGATTCTAAAGGTCGTGACTTGAAGTGGGTTGAAGGATTTCATATTGGCAGCACTATTGAGGGAAAAATTCAGGAGTCAAAGGAATTCGGTGTTGTTGTCAGTTTTGAGAAACATAATGATGTTTTTGGTTTTGTTTCTCATCACCAGTTAGGTGGAGCAATGGTGAAAGCAGGTGCAAATGTTCGAGCTGCTGTTCTTGATGTTGCCAAGACAGAACGCCTTGTTGATTTATCTCTAAAGCTTGAGTTTTTGGATAAATCAAGAGACAAGAGTTCTAACAGCCTAACTCACAAGAAGAAACGAAAAGGAGAGATGTCTAAGGACTTGGAGGTGCACCAAACAGTAAATGCAGTTGTTGAGATTGTGAAAGAAAATTACCTGGTTCTGTCAATTCCTGAGCATAACTATGCCATAGGTTATGCGTCGGTATCAGACTATAATACACAAAAGATATCTCAGAAACAATTTCTGAATGGACAAAGCGTTAGTGCCACAGTTATGGCTCTTCCAACCCCTTCTACTGCCGGGAGGTTGCTTTTGCTTCTGAAATCTATTAGTGAGGTGACTGAGACATCCAGTTCAAAGAAGGCCAAGAGAAAGTCTAGCTGTAATGTTGGATCCCTGGTTCAGGCAGAGATTACTGAAATCAAGCCTCTTGAAATGAGATTGAAATTCGGTATTGGTTTTCGTGGAAGGATTCATATAACAGAGGTCAACGATACTTGTCTTTTGGAGAATCCATTTAGTAACTTCAGAGTTGGCCAAACAGTGTCTGCGAGGATTATTGCTAAGGCTGGTCAATCTGATAATAAAAAAAGTCAGCTGTGGGATTTGTCTATCAAACCAAAAATGCTTGAAGATTCATGCATGATAGAGGATAAACTTGTGCCCAAGGAATATGAGTTTTCATCTGGGCAACACGTCTCTGGTTATGTATATAAAGTGGACGGTGAATGGGCCTGGTTAACAATATCTCGACATTTGAAGGCAAAGCTTTTTGTTCTCGACAGTGCTTGTGAACCTAGTGAACTTCAAGAATTCCAAAAAAGATTCTATGTTGGGAAGGCCGTGACTGGTCATGTTTTGAACTATAACAAGGAGAAAGCATCACTACGGTTGGCACTCCATCCATTTGCTGCCTCTCAAACTCTTGTTGATGGGGGAGCTCCAATTATGGATGACCTACAGGGTAATGCTCCCTGGGACAATGTTACTGCTCATATTCGCGAAGGAGATATTGTAGGTGGTAGAATTTCCAAGATACTGCCAGGTGTTGGTGGATTGCTGGTGCAACTTGGTCCTCATATACATGGCAGGGTTCATTTTACCGAACTTCAAGACTCGTGGGTTCCTGATCCATTGTCTGCATACAAAGAAGGTCAATTTGTCAAATCCAAGGTCCTAGAGATAAGCCATCCAGTCAAGGGTACCATTCACATCGATCTGTCATTACGTTTATCTTTGAATGGCATGCTTGGTCAAAATTCAGCAGAGTTCTCGAATAATCAGGATGCTCCCAGCAAACATGTGGATAAGATTGAGGATCTACAACCTGACATGGTTGTGCAGGGTTATGTTAAGAATGTTTCATCAAAAGGATGTTTCATTTCACTTTCAAGGAAACTTGATGCAAAAATTCTCCTCTCAAATCTGTCTGAGGGATATATTGATGATCCTGAAAAAGAATTCCCCATCGGGAAACTTTTAACTGGCCGGGTACTATCTGTGGAGCATCTATCAAAGCGAATTGAAGTTACCTTGAAGAAATCGGGCGTAAGCAACGCGTCAAAATCTGAAAACAGTGATCTGAGTCGCCTACATGTTGGGGAAATAATTTCTGGCAGGATTAAACGGGTGGAATCATATGGGTTGTTTATCGCACTTGACCACACAAATTTGGTTGGATTGTGTCATGTGTCACAGCTTTTGGATCATATTGGTAACATTGAATCGAAATATAAAGCTGGGGAGAAGGTTACAGCAAAGATTTTGAAGGTGGATGAGGAAAGGCGCCGAATCTCTCTTGGAATGAAGAACTTAGATGTTCGGGATGATATGAACTCTTCAAAAGAAGAATCTGATGAAGAAAAGAGTGAAAATGAATCTATGGATGACAGCAATGCTCAAATAAAAATAATTCCGGAGAGCAGTTTGCTTGGTATCCATAACATTGATGTTGAATGCCAGAATGAACGTTCAATTCTTGCCCAAGCAGAATCCAGGGCCTCAATTCCTCCGCTTGAGGTCGCACTTGATGACACGGAGCACTCTCATCCAGATGATGTCCTTCTTCAAAACCAAGGGCATATTGACGAGGCAGACACTATGGTTAAGAAGAATAAACAAGAAAAGAAGAAACCAAAGAAATTGAGTGAGCAAGAAATTAGTGCTGCTGAAGAGAGACGGCTAGAGGAAGATGAACCAAGGACTGCTGATGAATTTGAGATGGTGATTCGAAGCTCTCCCAATAACAGTTTTCTTTGGATAGCATACATGCGCTTCATGCTCTCTTTGGCTGATATCGAGAAGGCTCGCTCTATTGCTGAAAGGGCTTTGAATACAATTAATATTCGAGAAGAGGATGAGAAGCTAAACATTTGGGTGGCGTACTTCAACTTGGAAAATGAATATGGAAATCCTCCTGAGGATGCTGTTAAGAAAGTTTTTCAGAGAGCATTGCAATATTGTGATCCAAAGAAGGTCCATCTGGCACTCTTGAAAATGTATAAGAAGACTAATCAGAATAAATTAGCTGAGGAGCTTCTTGACAAAATGATCAAGAAGTTCAAGCATTCATGCAAGTTTTGGTTGAAACGGGTAAAGTGGCTTCTCAAGCAAAAGCAAGATGGGGTTCAGTCTGTTGTGCAACGGGCTCTTTTATGCCTTCCTCGCCATAAGCACATCAAGTTCATCTCGCAGACAGCTATCCGTGAGTTCAAATGCGGGGTTGCTGATAGAGGGAGAACCCTGTTTGAAGAAATTTTGAGAGAATACCCAAAGAGAACAGACTTATGGAGTGTTTATCTTGATCAGGAAATTAAACTTGGAGACGTGGATGTGATTCGTTCACTTTTTGAGAGGGCAATTAGTCTGAGTCTACCACCTAAAAAGATGAAATTTTTATTCAAGAAATATCTGGAGTATGAGAAGTCTTATGGTGATGAAAAACAGATCGAGTCTGTGAAACAGAAGGCCATGGAATATGTTCAGAATACCCTGGCCTGA
Protein:  
MTAPSKKKQQNPKQNDGPKFNKASQKQFKAKQTKNKKSFSNDAVVKDASIALQLEDDVPDFPRGGKSSLSQREREEIRAQVDEEFEGEERRLNKKNKKGKKFQNKSSQLSGDDLGSLFGDVLTGKLPRFANKITMKNISPGMKLWGVVTEVNEKDLVISLPGGLRGLVRSVDAVDPVLTDQIEDGEGSLPRVFHVGQLVSCIVLKLDDDKNDNKKRKIWLSLRLSLLHNGFSLDAVKEGMVLTAYVKSIEDHGFILHFGLSSFMGFLPKNSQAESRDSEVKTGQFLQGIVTKIDKTRKVVYLSSDPDTVSKCVTKDLKGISIDLLIPGMMVDARVQSTLENGIMLSFLTYFTGTVDMFHLQNTFPTSNWKDDYAKNKKVSARILFIDPSTRAVGLTLNQHLVHNNSPPSSVKVGDIYDIAKVVRVDKGMGLLLEIPSTPLPTPAFVNVSDVAEDEVRKLEKKFKEGSNVRVRILGYRHLEGLATGILKASAFEGSVFTHSDVKPGMATRAKIIAVDSFGAIVQFPGGVKALCPLRHMSEFEIVKPRKKFKVGAELFFRVLGCKSKRITVTHKKTLVKSKLPILSSYSDATDGLITHGWITKIEKPGCFVHFYNGVQGFAPRSELGLEPGSDAISTYQVGQVVKCRVISSIAASRRINLSFIMKPLRFSEEDGIKMGSVVTGVIDKVTASSVIVYVNAKDYLKGTIATEHLSDHHEHAALMKSVLKPGYEFDQLLVLDIESNNLALSAKYSLIKSASQLPSDLSQIRPQSIVHGYICNMIETGCFVRFLGNLTAFSPRSKAMDDQRSQLSEAFYIGQSVRSNILDVNNETSRITVSLKQSCCSSTDACFLQEYFLSENKIADLQSSDSKGRDLKWVEGFHIGSTIEGKIQESKEFGVVVSFEKHNDVFGFVSHHQLGGAMVKAGANVRAAVLDVAKTERLVDLSLKLEFLDKSRDKSSNSLTHKKKRKGEMSKDLEVHQTVNAVVEIVKENYLVLSIPEHNYAIGYASVSDYNTQKISQKQFLNGQSVSATVMALPTPSTAGRLLLLLKSISEVTETSSSKKAKRKSSCNVGSLVQAEITEIKPLEMRLKFGIGFRGRIHITEVNDTCLLENPFSNFRVGQTVSARIIAKAGQSDNKKSQLWDLSIKPKMLEDSCMIEDKLVPKEYEFSSGQHVSGYVYKVDGEWAWLTISRHLKAKLFVLDSACEPSELQEFQKRFYVGKAVTGHVLNYNKEKASLRLALHPFAASQTLVDGGAPIMDDLQGNAPWDNVTAHIREGDIVGGRISKILPGVGGLLVQLGPHIHGRVHFTELQDSWVPDPLSAYKEGQFVKSKVLEISHPVKGTIHIDLSLRLSLNGMLGQNSAEFSNNQDAPSKHVDKIEDLQPDMVVQGYVKNVSSKGCFISLSRKLDAKILLSNLSEGYIDDPEKEFPIGKLLTGRVLSVEHLSKRIEVTLKKSGVSNASKSENSDLSRLHVGEIISGRIKRVESYGLFIALDHTNLVGLCHVSQLLDHIGNIESKYKAGEKVTAKILKVDEERRRISLGMKNLDVRDDMNSSKEESDEEKSENESMDDSNAQIKIIPESSLLGIHNIDVECQNERSILAQAESRASIPPLEVALDDTEHSHPDDVLLQNQGHIDEADTMVKKNKQEKKKPKKLSEQEISAAEERRLEEDEPRTADEFEMVIRSSPNNSFLWIAYMRFMLSLADIEKARSIAERALNTINIREEDEKLNIWVAYFNLENEYGNPPEDAVKKVFQRALQYCDPKKVHLALLKMYKKTNQNKLAEELLDKMIKKFKHSCKFWLKRVKWLLKQKQDGVQSVVQRALLCLPRHKHIKFISQTAIREFKCGVADRGRTLFEEILREYPKRTDLWSVYLDQEIKLGDVDVIRSLFERAISLSLPPKKMKFLFKKYLEYEKSYGDEKQIESVKQKAMEYVQNTLA